Sidhant Chopra

icon indicating a website link https://scholar.google.com.au/citations?hl=en&user=UAAAD0kAAAAJ&view_op=list_works&sortby=pubdate icon indicating an email [email protected]

icon company Yale University icon location New Haven, CT, USA & Melbourne, Australia icon location Neuroscientist and psychologist interested in psychosis, neuroimaging, networks and better treatments.

Results 6 comments of Sidhant Chopra

Utilising s2v parameters in eddy_config.json / Add slice groups eddy

That's awesome- thanks! In the meantime, is there a way to turn eddy-correction "off", so pre-eddied data, using custom parameters not available in qsiprep, can be entered into the pipeline?

Visualising volume data with surface boundaries

Hi Tim - thanks for the response. Yes, our intention was to use this feature to do quality assessments on large datasets. Great to hear that you plan to implement...

brainconn(): edge.color cannot be changed with edge.color.weighted = T

Hi - thanks for pointing this out! I will add an option to allow for color scales to be entered when using edge.color.weighted. In the meantime, here is a workaround...

brainconn(): edge.color cannot be changed with edge.color.weighted = T

I haven't incorporated this feature into brainconn yet, but the fix above should still work. If you want to attach your custom_atlas and conmat - ill take a look.

brainconn(): edge.color cannot be changed with edge.color.weighted = T

Hi - this was indeed a bug with the "ortho" view. I have now fixed this and changed the code to allow for any ["scale_edge_colour*" function](https://rdrr.io/cran/ggraph/man/scale_edge_colour.html) from ggraph to be...

Positive and negative scales for edges

Hey Hannah, I haven't added functionality for two separate colour bars, but you could achieve the same effect using a diverging colour scale with a mid point. e.g: `brainconn(atlas =...