Sharpy

Route Sequence

1

Hi Is there a way to automate the route sequence instead of manually adding all the stops for a single route? Thank you

Sample Bam File

3

Can someone please post the sample .bam file for the velocyto python notebooks for which i can myself generate the loom file.

Bam file does not have umi tags

3

Hi I am using https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR8869110 this data for my processing. When i am using only the bam file, i get killed error in creating loom file part. But as suggested...

How to create seurat object from a loom file directly??

5

I have a loom file and want to perform differential expression analysis. How should i proceed?

Hi Is there a way i can get the equation if the ellipse that are formed through the ggbiplot function. Thank you

Analysis Pipeline : calculate_grid_arrows()

1

When i run the analysis for dentategyrus notebook, after calculating the calculate_grid_arrows() function, i get a return of flow_grid (np.ndarray) – the gridpoints. Why this array does not have any...