Dr. Manoj Kumar
Dr. Manoj Kumar
Hi, Could anyone please let me know the initial codes to start visualizing the meanQ files, generated from fastSTRUCTURE. I am totally lost in the tutorial of pophelper. It is...
I am trying to install RSEM but not able to see software sub-directory. Moreover not sure what is $(your_favorite_location) in the clone command? Please advice..
Hi, I have output file (sorted BAM) generated from hisat2-2.2.0 pipeline, a reference fasta file and fastq file of MinION. Please let me know the command to RUN RSEM to...
Hi, I am using masurca for making hybrid assembly. However, it shows following error. Please let me know how to figure out the issue. Run command: /bin/masurca -t 32 -i...
I am trying cd-hit-454 to remove duplicate sequences in a file that is 850992KB of size with the following command. ---- cd-hit-454 -i /home/kumarm/CD-HIT/marge1.fasta -o /home/kumarm/CD-HIT/454_reads_95 -c 0.99 -n 10...
I am trying to RUN cd-hit-dup, however it is showing following: I downloaded the version (cd-hit-v4.8.1-2019-0228) and extracted and running the programs... command: cd-hit-dup -i /home/kumarm/CD-HIT/marge1.fasta -o /home/kumarm/CD-HIT/output.fasta ERROR: cd-hit-dup:...
I installed Roary using conda. However, it shows an error when I run it. Error:::::::::: Can't locate Bio/Roary/CommandLine/Roary.pm in @INC (you may need to install the Bio::Roary::CommandLine::Roary module) (@INC contains:...
Hi, I am getting following error: Traceback (most recent call last): File "/home/anaconda3/envs/bioinfo/bin/circlator", line 58, in exec('circlator.tasks.' + task + '.run()') File "", line 1, in File "/home/anaconda3/envs/bioinfo/lib/python3.7/site-packages/circlator/tasks/all.py", line 74,...
Prokka error
It shows following error but it seems I have 'hmmer' in my system. error: Failed to load module Bio::SearchIO::hmmer3. Can't locate Bio/SearchIO/hmmer3.pm in @INC (you may need to install the...
Hi, I am installing prokka in several ways but it show following error: ###Tried these different ways to install prokka: sudo apt install prokka conda install -c conda-forge -c bioconda...