Dr. Manoj Kumar
Dr. Manoj Kumar
error
I am trying Snippy with contigs genomes, but after running for a while it shows the following error. Please suggest how to improve it. Also, I tried snippy-multi but it...
Hi, I am comparing two genomes with a reference genome but BRIG generates alignment with only one genome, it is not showing another genome in the ring. Please help me...
Hi, I am comparing two genomes with a reference genome but BRIG generates alignment with only one genome, it is not showing another genome in the ring. Please help me...
Hi, I am trying to install pysam and edlib. It shows following error. Please suggest. -- b) conda install -c bioconda pysam c) conda install -c bioconda edlib error----------- Collecting...
I was trying to run the pipeline but I could not find any instructions on how to use it. Please suggest how to prepare input data and run it. Thank...
I have aligned a single-read R1 file with a virus genome using bwa. Next step, I am extracting mapped reads from this bam file. I am following these steps. samtools...
Hi, I am trying to make a hybrid assembly using Unicycler. However, it generates a assembly with two segments but when I try it with the same datasets at different...
I am trying to run the nextstrain pipeline, I did following steps but I am getting an error. Step 1. I downloaded seasonal-flu repo and created a directory called "data/h3n2",...
Hi, I am following my previous issue #304, it has been closed. I am already using 'salmonella' in submol.yaml, but I am not able to get the results. When I...
Hi, I have installed mlst_check using "conda install perl-bio-mlst-check". However, I am trying to download the database, it gives an error message: Could not connect to https://pubmlst.org/data/dbases.xml Thank you, Manoj