sdwien

Hi, the data I was working with are human data, and I cannot share them. I will try and reproduce the error with another MiSeq dataset and then share them...

Please find some paired-end cutadapt-trimmed reads from a MiSeq 2x300 bp run here (size is 92 MB): https://gofile.me/2dg7z/baBjJr82g These are mouse sequences where - after trimming - read pairs may...

Here is a new link to the same data: https://gofile.me/2dg7z/fNDzF2HUR Thanks for looking into this, best, Sophia

I used `-l SR` (stranded and reverse strand) for nanopore direct RNA Seq data.

This happened to me when I tried to use a tab-separated input file. Using a comma-sepatated file with the same contents, it worked fine. `head` of my file: ``` ,baseMean,log2Foldange,lfcSE,stat,pvalue,padj...