Library type for Nanopore libraries

[imet-k]

I tried to use this tool for Nanopore direct RNA sequencing. However, library type was not recognized.

[sdwien]

I used -l SR (stranded and reverse strand) for nanopore direct RNA Seq data.

[callumparr]

I have used "U" as was default in config.yml for pipeline-transcriptome-de but now I am thinking it should be stranded but i am not understanding the reverse part? Should it not be SF as this is essentially single-read and the baseball sequence is output as 5' to 3' of original RNA molecule despite being sequenced in the reverse from 3' to 5'.