spatialdata-plot
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scverse
Static plotting for spatialdata
I am plotting an image and no colorbar is display, even if `colorbar` should default to `True` in `pl.show()`. I am currently using the workaround shown in the code to...
folllow https://github.com/scverse/spatialdata/pull/621 and should be merged after that. I modified couple of plots that I think it made sense, but for two, specifically the `NotebookTransformation` ones for `rotation` and `affine`...
Outlines are rendered on an axis separate from the filled labels. The transformation was only applied to the filled labels, so that the outlines had an identity transform. This was...
When there is a object with 2 coordinate systems and `pl.show()` is called without specifying `coordinate_systems`, by default two subplots are created. If the user adjust the `title=`, both titles...
While updating the Visium HD notebook I have tried converting the bins to points and plotting them, and I found that this leads to an error in `spatialdata-plot`. Here is...
Hi developers, Thanks for the amazing framework. I am using the framework to extract non-linear features from image patches of visium samples. When performing some QC on the data, I...
It seems `outline=True` takes a code path that causes labels to have a wrong scale. It is important for the images that I render to not have filled labels, but...
Cannot plot table annotations for points as it seems that the annotations columns from the table are treated as the annotation column that would be found in the points dataframe....
I get an out-of-index error when the table is longer than the shapes. To reproduce please run [this notebook here (stereoseq data)](https://github.com/scverse/spatialdata-notebooks/blob/main/notebooks/examples/technology_stereoseq.ipynb). The cell that leads to the problem is...
Hello @LucaMarconato! I noticed that rendering of xenium morphology images takes 10+ minutes each time. I run the code on a server and have enough memory to fit the image...
