spatialdata-plot
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Colorbar not shown for image
I am plotting an image and no colorbar is display, even if colorbar
should default to True
in pl.show()
.
I am currently using the workaround shown in the code to fix this.
##
from spatialdata.datasets import blobs
import spatialdata_plot
import matplotlib.colors
import matplotlib.pyplot as plt
sdata = blobs()
sdata['single_channel'] = sdata['blobs_image'].sel(c=slice(0, 0))
sdata.pl.render_images('single_channel').pl.show()
# workaround
ax = plt.gca()
data = sdata['single_channel'].values
norm = matplotlib.colors.Normalize(vmin=data.min(), vmax=data.max())
mappable = plt.cm.ScalarMappable(cmap='viridis', norm=norm)
plt.colorbar(mappable, ax=ax)
plt.show()