Scott Cain
Scott Cain
**Describe the bug** In a nutshell: the state of collapsed versus open categories in the track selector doesn't appear to be saved during a session, so that if I close...
During a conversation with some RGD devs (@jdepons included) and curators, it was pointed out that it is hard to discover that there are other assemblies in JBrowse. They suggested...
In the readme, there is this section: ``` [MCScanX_h](https://github.com/wyp1125/MCScanX#id8) The BLASTP input of MCScanX can be replaced by a tab-delimited file containing more reliable pairwise homologous relationships. In this case,...
Updating table descriptions to generalize mage to include next-gen sequencing experiments and other possible analyses instead of microarray only. This is a suggested topic for the 2018 PAG hackathon. A...
The tmp_gff_load_cache table is a not-really-temporary table that the GFF3 bulk loader uses to keep track of feature names and IDs. To make database replication easier, it should have a...
I want to look at this next week, but don't want to forget, so I'm making an issue of it. In the security-bug-fixes branch, the yeast chromosome data can't be...
In several GBrowse instances around the net (WormBase, arabidopsis, paramecium for example), the cds glyph is producing incorrect translations for second and subsequent exons in the display. That is, for...
It seems to me that the gbrowse_clean script is not quite as smart as it ought to be. That is, with regards to session variables, the GBrowse.conf file says in...
On the gbrowse_details page for an alignment, the id of the target is used in the fasta line, implying (well, actually stating) that the sequence is of the query, whereas...
This is another request from RGD: it turns out that one of the RGD PIs hates goldenrod, and they do their site build with scripted CLI commands. They said it...