Scott Cain
Scott Cain
Hello, While still have the same question in https://github.com/vbauer/manet/issues/79, I have a further question on how whitelists should work. I have the following whitelist entries: ``` whitelist: - "staging.wormbase.org" -...
Hello, How does one express the arguments for the --whitelist option on the command line? I have tried several things, like: root@26e3791d4e55:/# manet --whitelist wormbase.org error: "List of allowed sites...
The GBrowse url used (gbrowse.org) isn't associated with GBrowse, and is defunct anyway. A better url is for the gmod.org wiki page for GBrowse
Time for honesty: I didn't actually test this change! I feel a little like this is a "I'm feeling lucky" PR. helping people figure out how to use regex in...
# Submitting a pull request Please base your pull request based on the "dev" branch of JBrowse The default branch is "master" but this contains the last stable release, and...
For features in the linear genome view that are logically strand-less (regardless of what the GFF or other annotation indicate), it would be nice to have a option in the...
**Is your feature request related to a problem? Please describe.** When there are long blocks of synteny, it can be difficult to see what is going on at a lower...
In order to implement JBrowse 2 at WormBase, I need a few items implemented: Need to have: 1. A lib that provides programmatic access to the functions that make jb2export...
In this JBrowse 2 view: https://s3.amazonaws.com/wormbase-modencode/test/jbrowse2/index.html?session=share-H2ybe1KrzN&password=ZHKTa (location: IV:12,127,992..12,149,148) the gene B0001.4 disappears when the view is flipped horizontally. Note that at least "part" of JBrowse realized that there is a...