Scott Cain

The image created from this dockerfile is intended to be a parent image for a JBrowse docker file, so that the author of a jbrowse docker file doesn't have to...

I nice side effect of having this docker file around is that it also serves as concise documentation of what is needed in a Debian-based environment for building JBrowse.

My understanding is also somewhat rudimentary, but what I think happens is that I have to build an image and then do a push of the image to docker hub....

For the big NIH MODs, there is some data already in public S3 buckets (refSeqs, genes and UCSC conservation tracks), and more will be coming. That's for yeast, fruitfly, worm,...

It's definitely the case that dragging on the location bar after clicking the highlight button should highlight. What I'd like to add is a hook to pop up a menu...

I've thought about doing this by hand, especially when I've tested a webpack version of JBrowse, since the time spent getting config files becomes even more noticeable. I would love...

Is there a technology issue that prevents this from happening?

Ah, I wasn't planning on doing "data=http://...." rather having a local trackList.json that points at remote data in the urlTemplate, so perhaps this issue doesn't apply to what I want...

We could ask the bionano folks if they have some data they could give us to build a plugin with.

Looking at the coordinates of these features, I see that the gene has these coordinates: IV:12,135,077..12,137,353 and the noncoding child transcript has these coordinates: IV:12,135,074..12,138,193 If I had to guess,...