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Format of xyz.homology?

Open scottcain opened this issue 1 year ago • 1 comments

In the readme, there is this section:

[MCScanX_h](https://github.com/wyp1125/MCScanX#id8)

The BLASTP input of MCScanX can be replaced by a tab-delimited file containing more reliable pairwise
homologous relationships. In this case, users should use MCScanX_h instead. The executation of 
MCScanX_h is very similar to that of MCScanX, except that the "xyz.blast" file should be replaced by 
"xyz.homology" file. At the bottom of screen output, statistics on numbers / percentages of collinear 
homolog pairs are shown.

But says nothing about how this homology file should be formated. Can you please define this better, perhaps with an example?

scottcain avatar Oct 25 '22 18:10 scottcain

@scottcain - Have you worked out the format of "xyz.homology"? If so, could you please explain?

gunjanpandey avatar Jan 11 '23 01:01 gunjanpandey