Scott Chamberlain comments

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                                            Scott Chamberlain

Add setters/accessors to basic classes

Awesome, thanks. Will have a look soon, especially with an eye to see if taxize will require anything else

Add setters/accessors to basic classes

@zachary-foster will do next monday, leaving on vacation

Phylogeny in a taxmap?

thanks @zachary-foster - I'll investigate over the next few days and report back

Phylogeny in a taxmap?

@zachary-foster so we can do `metacoder::parse_phylo`, but can you reconstruct the phylogeny after making it a taxmap object? something like `as_phylo()`?

Phylogeny in a taxmap?

is there a way to add data after creating a taxmap? e.g., if i use `metacoder::parse_phylo`, i want to include higher taxonomy data, but not sure how to add a...

New function(s) to add taxa to a taxonomy

good idea. is there a way to do this now? and are you talking about the object `taxonomy` or just to any objects in the pkg?

New function(s) to add taxa to a taxonomy

So right now, someone would need to e.g., recreate the entire `taxonomy` object with new taxa if they had new taxa to add?

New function(s) to add taxa to a taxonomy

Definitely seems like a pain point that we should sort out

Add a figure to one of the vignettes demonstating subtaxa, supertaxa, leaves, etc

seems like a good idea

Parsing vignette

Looks good to me. I can see how suppressing progress bars would help (#162) I think it's good t include, it's good to have placeholders for the other classes so...