Scott Chamberlain
Scott Chamberlain
here's milestone `v0.1` https://github.com/ropensci/ghql/milestone/1 - just a few issues to deal with, should be soon
Are you definitely using NCBI? The data source in question in that taxize issue 785 is for Catalogue of Life, not NCBI. Anyway, NCBI may also throw 429 errors. Do...
NCBI's infrastructure is not very good, so I'm not surprised that you are running into errors with a lot of names. Another option is `taxizedb` - idea is the same...
thanks @zachary-foster - it's complex so I'll take a bit to make sure I understand all of this. For my immediate concern about looking at the work on the `eval`...
Yes, a chat would be good. i'll email you to schedule that
I'll let @zachary-foster respond on the taxa side of things as he's the maintainer of it. Is your pr2 data a proper (SQL) database? Or a set of tabular files?...
@zachary-foster yep, i'll take a look ..
sorry for the delay! just back from vacation. Trying to install vectorize branch and getting errors related to vctrs - same problem with the dev and cran version of vctrs....
@ctekellogg thanks for your responses. Thanks for the details on the PR2 database. I'll have a look. Is `taxize::classification()` the only `taxize` function you are thinking about? Are there other...
Looks good for the most part. is this intended behavior? ```r x 'family'] #> #> [1] 9606|Homo sapiens Linnaeus, 1758|species 1386|Bacillus Cohn 1872|genus #> Rank levels: phylum < family <...