schultzn

Nagashima et al. Japanese version of The Cancer Genome Atlas, JCGA, established using fresh frozen tumors obtained from 5143 cancer patients.

5

Is the data available for download? https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7004528/ Please keep this checklist for curation of a new study. - [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one...

Aggarwal et al., Small Cell Neuroendocrine Prostate Cancer, JCO 2018

7

http://ascopubs.org/doi/suppl/10.1200/JCO.2017.77.6880 The supplemental tables have mutation data (contains copy-number calls, which have to be pulled out and converted) and expression levels.

Group Comparison not working

1

Reported by several users since yesterday, the group comparison tool does not seem to be working. See this example: https://www.cbioportal.org/comparison?comparisonId=659e9a95b01fff74fbb743da 1: Error: Unsuccessful HTTP response 2: Error: Unsuccessful HTTP response

I am not sure if this was intentional, but the new Plots tab on the study view is missing the "same gene" functionality that we have in the results view....

The TP53 mutation rate seems very low ... I don't think all the samples in the list with mutation data have been sequenced https://bit.ly/3Vrsh5n

Try this link: https://bit.ly/3XRbuKr The Type of Genetic Alterations Across All Samples should show the alterations, but instead shows "no alteration"

See [this link](https://www.cbioportal.org/results/comparison?cancer_study_list=thca_tcga_pan_can_atlas_2018&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=rna_seq_v2_mrna_median_all_sample_ref_normal_Zscores&case_set_id=thca_tcga_pan_can_atlas_2018_all&gene_list=ARG1%253AEXP%253E2%252C%2520CD52%253AEXP%253E2%252C%2520ITGBL1%253AEXP%253E2%252C%2520TF%253AEXP%253E2%252C%2520PTGIR%253AEXP%253E2%252C%2520TENM3%253AEXP%253E2%252C%2520AS3MT%253AEXP%253E2%252C&geneset_list=%20&tab_index=tab_visualize&Action=Submit&comparison_subtab=clinical&comparison_selectedGroups=%5B%22Unaltered%20group%22%2C%22Altered%20group%22%5D&comparison_groupOrder=%5B%22Unaltered%20group%22%2C%22Altered%20group%22%2C%22Unprofiled%20group%22%2C%22CKAP4%3A%20EXP%3E2%22%2C%22ROBO1%3A%20EXP%3E2%22%2C%22UBE2S%3A%20EXP%3E2%22%2C%22GOLGA3%3A%20EXP%3E2%22%2C%22H2BC7%3A%20EXP%3E2%22%2C%22ALB%3A%20EXP%3E2%22%2C%22CDNF%3A%20EXP%3E2%22%2C%22NDRG1%3A%20EXP%3E2%22%2C%22XPO1%3A%20EXP%3E2%22%2C%22DPYSL2%3A%20EXP%3E2%22%5D): For Hypoxia scores all values are on the same line, making the box that ranges from the 25% to 75% not visible and therefor accessible via mouseover....