liana
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saezlab
LIANA: a LIgand-receptor ANalysis frAmework
Hi, CellphoneDB recently released version v4 of its database and I was wondering if it will be included into the consensus resource of LIANA anytime soon. I'm very interested in...
Hello, I was just wondering, some of the methods implemented in LIANA allow for comparing results across datasets (i.e. diseased vs normal) to see how signaling changes according to conditions....
Hello, Thanks for this useful tool! Your approach to making an aggregation tool is quite helpful. Is it possible to show linked ligand-receptor names in chord_freq plot? Thank you.
Hi, thanks for your package. I wanted to replace some arguments of a Seurat function that was included in one of your "call_[method_name]" functions. (For example, call_italk invokes Seurat::FindAllMarkers) I...
Extend the Chord diagram /w communication strength on e.g. `LRscore` following filtering by `aggregate_rank`.
Hello, I have been working with this Seurat data file, included in the link, it is not very big - https://uni-bonn.sciebo.de/f/1980218563. I have run it through the liana_wrap() function, and...
Hello, I successfully installed Liana - thanks for your help with that! There's a new problem, which did not affect the above function when using the PBMC dataset in the...
Hi, thank you so much for such a great package. I've been trying to use liana to compare cell-cell communication within my dataset of three conditions. And I was wondering...
Hi Daniel! I encountered the following error when using the test data example with show_homologene() and ortholog_resource: > ```r > > ortholog_resource + target_organism = 10090) # mouse > [2024-02-03...
