liana
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saezlab
LIANA: a LIgand-receptor ANalysis frAmework
Hi there! I encountered the following error when running the sample data when using liana_wrap . Expression from the `RNA` assay will be used Running LIANA with `seurat_annotations` as labels!...
I just recently tested tensor-cell2cell with LIANA following the R tutorial from here: https://saezlab.github.io/liana/articles/liana_cc2tensor.html. I have 10 samples, 7 disease and 3 healthy. I had integrated all of them using...
Hello, Thanks for this very user-friendly package! I was generating frequency Heatmaps using the heat_freq() function and I noticed that the sender and receiver cell types are ordered alphabetically along...
Hi, Thank you for the package. I have three conditions and in each condition i have three samples. I want to look at communication between three major clusters. I followed...
Hi there, I'm consequently getting the interaction IL6 - FCGR3B out of my data. I am not aware of Fc-receptors being able to bind cytokines, though the target cell does...
Hello, Thanks for sharing this great package. I was trying to use liana to analyze my data, which was a `SingleCellExperiment` object that I have been using for a while....
In other word, is there anyway to **benchmark a new CCC method** by using LIANA?
I was having issues installing liana. Below are the input code and the error: remotes::install_github('saezlab/liana') Error: Failed to install 'unknown package' from GitHub: Line starting 'Config/testthat/edit ...' is malformed!
Hi, great package! I am running into an error with heat_freq(): ``` heat_freq(liana_trunc) Error: number of observations in bottom annotation should be as same as ncol of the matrix. >...
Just a heads up, the following warning was generated as part of a liana_wrap() function call invoke()` is deprecated as of rlang 0.4.0. Please use `exec()` or `inject()` instead.
