cosmosR
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saezlab
COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.
Hi @adugourd , I found `Metab__HMDB0001514_c` and also `Metab__439213_c` in the PKN, but based on this: https://hmdb.ca/metabolites/HMDB0001514 they both encode "D-Glucosamine". Unfortunately, in the PKN, they have different reaction partners,...
Hi saezlab, Could you please guide me how to integrate phosphoproteomics and transcriptomics data together using CosmosR? I have generated kinase enrichment using KSEAapp and transcription factors from decoupleR (https://saezlab.github.io/decoupleR/articles/tf_bk.html)...
Dear Aurelien, Attila, Excellent bioinfo tool, congratulations! I have two questions concerning to the metabolite annotation in the PKN 1/ Looking the full PKN network, I have realized that metabolites...
Dear Saez Lab Thanks for your support earlier. I have setup COSMOS in R, and currently running into issues while using the Gurobi solver. Below is a copy of the...
