ryao-mdanderson

Hello @ksenia007 and @BioSenior 👍 Thank you for sharing. I have the same error message when I ran 'python run_pretrain.py' followed in README. OSError: Model name 'dna6' was not found...

@ksenia007 👍 Thank you very much. I got it. since I am running the code in a compute cluster node which does not have internet access, I followed your suggestion,...

Hello @jerryji1993 : I fixed the missing python modules. Thank you very much. However, I hit a new error message in testing 2.2 Model training as the following. Just FYI,...

Hello Roary support team: I find this docker command makes a little move on, however, I would like to hear your suggestion to provide a meaningful test. $ docker run...

@qiyubio 👍 You are right! I have to use a GPU node with gpu mem 32G (V100X). My initial test is with a GPU memory 16G, caused cuda out of...

@275145 my guess is your 24GB gpu memory is not enough for this application. "RuntimeError: CUDA out of memory" also suggests this. hope this helps.

Hello RoseTTAFold team: I realized one of the failure of running run_pyrosetta_ver.sh is due to my database location. I have set up the database in a shared location on HPC...

@biochem-fan , Thank you for your reply. A local standalone server with full internet access does not have the gpu card. I recall 'make' failed on error make[2]: *** [src/apps/CMakeFiles/relion_gpu_util.dir/build.make:112:...

Hello @biochem-fan Thank you for your tip for cmake without cuda suppport. I will try.

Hello @biochem-fan : I tried build relion on a standalone server which has internet access. This goal is to download data models. I failed make process at 58%, however, I...