ryao-mdanderson
ryao-mdanderson
Dear author: I am new to this application. I set up dnabert conda environment for the application on HPC cluster. I followed the instruction step 2.2 Model training to run...
Dear Roary author and support team: I use a RHEL 7.9 server to test Roary container. I use command 'docker pull sangerpathogens/roary' to acquire an image "docker.io/sangerpathogens/roary " In my...
Hello @tseemann team: I am new to prokka. I set up prokka on our HPC cluster. after the installation, /risapps/noarch/prokka/1.14.6 is my git clone location, run $ /risapps/noarch/prokka/1.14.6/bin/prokka contigs.fa [23:03:13]...
Dear Scalpel author, I tried to install scalpel on RHEL 7.9 server, after git clone the package, I followed the readme, do $ ./bootstrap I find directory autom4te.cache created but...
Hello RoseTTAFold team, Thank you for sharing the code and supporting the community. I test the code on our HPC cluster, refer to README documentation, and hit a CUDA out...
Dear distiller-nf support, This is a beginner question. I am using the test example on an HPC cluster RHEL 7.9 with lsf scheduler. When I run command $ nextflow distiller.nf...
Hello ESM team: I am trying setup ESM on our HPC cluster, OS RHEL7.9. I tied the following: 1)create a conda environment esm2-1.0.3 conda create -n esm2-1.0.3 python=3.7.3 2)conda activate...
May I know what is Mosek used for in the application? Does it have to be Mosek 8? Which command(s) invoke Mosek and how do I check I am actually...
Dear Relion support team, This is related to a closed issue report #1003. I checked out the work around for blush model download. Thank you. However, while running relion5 beta,...
Hello openfold team: Thank you for your support. I tried to install openfold on a RHEL7.9 server by following README installation section. The command $ scripts/install_third_party_dependencies.sh successfully installed many packages,...