Configuration file for the databases

[huhlim]

I realized that paths for the database are hard-coded in the bash scripts. For example, in the "run_pyrosetta_ver.sh", the PDB100 database is referred as DB="$PIPEDIR/pdb100_2021Mar03/pdb100_2021Mar03" I am suggesting that it would be better to have a configuration file for the database paths for further updates on the databases.

[minkbaek]

Thanks for the suggestion! We'll update it

[ryao-mdanderson]

Hello RoseTTAFold team:

I realized one of the failure of running run_pyrosetta_ver.sh is due to my database location. I have set up the database in a shared location on HPC cluster. Should I just setup export PIPEDIR="hard code database path" $PIPEDIR in run_pyrosetta_ver.sh ?

I agree huhlim's suggestion for a database configuration file. Thanks!