ryrl_

error

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**Describe the bug** When I ran pyscenic in anaconda environment, it always report "ImportError: cannot import name 'dumps_msgpack' from 'distributed.protocol.core'". How should I solve this problem? **Steps to reproduce the...

runSCENIC_4_aucell_binarize ERROR

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Error in h(simpleError(msg, call)) : error in evaluating the argument 'object' in selecting a method for function 'getIntName': object 'scenicOptions' not found

ERROR in runSCENIC_2_createRegulons

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why runSCENIC_2_createRegulons is always ERROR Error in runSCENIC_2_createRegulons(scenicOptions = ScenicOptions, coexMethod = c("top5perTarget")) : It is not possible to load the following databses: hg38__refseq-r80__10kb_up_and_down_tss.mc9nr.feather

runSCENIC_2_creatRegulons Error

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11:52 Step 2. Identifying regulons [1] "Cannot call io___ReadableFile__Open(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries. " Error in runSCENIC_2_createRegulons(scenicOptions, coexMethods = c("top5perTarget")) : It is not possible to...

Cannot import packages

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**Describe the issue or bug**  A clear and concise description of what the issue or bug is. Please note that this to report demonstrated or suspected issues or bugs...

`import pyg_lib` fails due to `AttributeError: module 'pyg_lib' has no attribute 'ops'`

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### 🐛 Describe the bug ```python import torch_sparse ``` When I run the code above, it raise an error that pyg_lib has no attribute 'ops'. How shoud I solve this...

Ligand-receptor plot always report Error

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## Description When I use `sq.pl.ligrec` after `sq.gr.ligrec( adata, n_perms=100, cluster_key="cluster", clusters=["Polydendrocytes", "Oligodendrocytes"], ) `, it always report an error 'ValueError: After removing rows with only NaN interactions, none remain'....

- MacOS - python=3.12.4 - fsspec=2025.3.2 - torch-geometric=2.6.1 ```python dataset = TUDataset(root=root, name='ENZYMES') ``` Traceback (most recent call last): File "", line 1, in File "/Users/wakala/venvs/versions/3.12.4/torch/lib/python3.12/site-packages/torch_geometric/datasets/tu_dataset.py", line 129, in __init__...