ryrl_

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> i have the same problem too Did you solve this problem?

Has anyone encountered the same problem

It seems that `qclus pipeline` removed much more cells than cellbender. How about the qc result of the raw expression matrix?

![image](https://github.com/user-attachments/assets/c6ef77de-e3f2-4c9f-8edb-cbc500b20e4b) This issue is caused by the create_graph function in arboreto.core. To resolve it, simply comment out the second command. While this error has already been fixed on GitHub, it...

I confirmed this error by data `adata = sq.datasets.seqfish()`, it still report this error. After analysing the data process pipeline, I found that **Only four tissues have effective pvalue, others...

This error is caused by the source code create_graph of arboreto.core and have been fixed in github. However, it has not been updated into 0.1.6. You can modify the code...