Roberto Siani

gene ontology cross-annotation mapping

6

Congrats on the release. I already tried bakta on a couple genomes I was studying and the results are really good, without being much slower than prokka. (output also works...

Python 3 pachage rpy2 needs to be installed to use the R function.

7

Hi, still having trouble running flexible_genome_sweeps (bash snakemake.sh). After setting the configuration file and running the script I get this error: Provided cores: 1 Rules claiming more threads will be...

How to display only a taxonomic level in the ggdiffbox

1

Gratitude for developing this package. I was wondering whether there was a way to not display the full taxonomy in the diff_analysis plot as my figures look a bit overcrowded...

name must uniquely match one column in object

2

Hi, first of all thank you for your outstanding contribution to pangenomic studies! I have incurred in this problem when using panviz and panvizgenerator: "name must uniquely match one column...

BUSTED-PH with large number of sequences

3

Hello there, I have previously used BUSTED-PH successfully on ~500 seqs. Now, I was trying to improve the analysis for a publication and I managed to get up to ~1500...