Roberto Siani

Hi @oschwengers , apologies for sounding confusing. I will try to elaborate. So, let's take that I run the program as this: `bakta LjR124/LjR124.fna --db ~/.local/share/applications/bakta_db/db/ --prefix LR124 --output LR124_bakta...

Exactly! And I totally agree with you, with the wealth of databases around it would be a huge loss to only rely on a single database, but as soon as...

Hi, It should work kinda like this as far as I got it. counts = otu_table(phytted) %>% as.data.frame() colData = meta(physeq) %>% as.data.frame phyExp = SummarizedExperiment(assays = list(counts = counts),...

Same problem here, went from 18 to 17 samples without any idea why. I also thought about a naming issue, checked again and again, but can't fine what exactly it's...

Seemingly the problem vanished. I am just shooting in the dark at this point, but might be some conflict with other libraries loaded? I restarted my session and then it...

Doesn't seem to work for me ``` pak::pak("AllanCameron/geomtextpath#117") Error: ! error in pak subprocess Caused by error: ! Could not solve package dependencies: * AllanCameron/geomtextpath#117: ! pkgdepends resolution error for...

I managed to get it to work after installing again "AllanCameron/geomtextpath" and also textshaping 0.4.0

Sure, here is the output (base) rsiani@mooncake:~$ conda list -n PopCOGenT # packages in environment at /home/rsiani/.conda/envs/PopCOGenT: # # Name Version Build Channel _libgcc_mutex 0.1 main _r-mutex 1.0.0 anacondar_1 asn1crypto...

Dear @spond, thanks for the fast reply. I managed to get one run to complete in some hours, but only with Srv turned off. Now I am trying again with...