Rocco Moretti

How did you download the source code? Did you get it from , or did you get it from the github repo? The version from rosettacommons.org should be set up...

First off, the "bin" download should already have a version of Rosetta pre-complied for you (though it would be a ".static.linuxgccrelease" executable name instead of a ".default.linuxgccrelease" or a plain...

@ZY3082178168 First off, it's best to open up a new discussion if the symptoms you're seeing are different from the original poster. But I'm guessing you're on Windows, and have...

If I'm interpreting your situation correctly, you'll likely need to make the A'+B starting complex somehow. If A and A' are structurally similar enough, it may be sufficient to simply...

Helical and helical bundle proteins are indeed favored by RFdiffusion, as it's slightly easier to diffuse into helices than beta sheets. However, RFdiffusion should be able to generate a large...

If you don't want to rebuild those regions, you just need to make sure your contig map doesn't include the missing residues. e.g. `contigmap.contigs=[A377-387/A391-643/0 76-76]` (assuming you're just missing a...

This is going to depend heavily on what you're trying to log into. Generally speaking, though,"academic email" generally means using an email address that has been provided by your university/college/academic...

This comes down to shell command line parsing, before RFdiffusion even sees things. You need to surround the contig map specification in quotes in order to pass it through to...

Creating a chemical bond is a two-step process. First you need to change the residue identity (ResidueType) to be one which has all the annotations that it's able to accept...

If the function returns true, it should have changed the Conformation. Note, though, that the function only annotates the disulfide bond being present. It does not actually change any of...