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Issue when trying motif scaffolding with target

Open DazLe-Q opened this issue 7 months ago • 2 comments

When running example design_motifscaffolding_with_target.sh I have a problem: no viable alternative at input '[A25-109/0' See https://hydra.cc/docs/1.2/advanced/override_grammar/basic for details

Set the environment variable HYDRA_FULL_ERROR=1 for a complete stack trace.

DazLe-Q avatar May 30 '25 16:05 DazLe-Q

Image

DazLe-Q avatar May 30 '25 16:05 DazLe-Q

This comes down to shell command line parsing, before RFdiffusion even sees things. You need to surround the contig map specification in quotes in order to pass it through to the script as-is, rather than have the shell attempt to interpret it and break it up into pieces at the space.

roccomoretti avatar May 30 '25 17:05 roccomoretti