RFdiffusion
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Issue when trying motif scaffolding with target
When running example design_motifscaffolding_with_target.sh I have a problem:
no viable alternative at input '[A25-109/0'
See https://hydra.cc/docs/1.2/advanced/override_grammar/basic for details
Set the environment variable HYDRA_FULL_ERROR=1 for a complete stack trace.
This comes down to shell command line parsing, before RFdiffusion even sees things. You need to surround the contig map specification in quotes in order to pass it through to the script as-is, rather than have the shell attempt to interpret it and break it up into pieces at the space.