Rocco Moretti
Rocco Moretti
A tutorial for the full RosettaAntibodyDesign protocol can be found at https://meilerlab.org/rosetta-antibody-workshop-2021/ To my understanding, the FR.pdb is simply the antibody framework onto which you're grafting the CDRs. I might...
The URL for the documentation is https://docs.rosettacommons.org/docs/latest/build_documentation/Building-Rosetta-with-TensorFlow-and-Torch Relevant, the reason for the move is that we changed "pytorch" to simply "torch" with respect to Rosetta. (As we just use the...
Note that the default radii for the MolecularSurfaceCalculator are really only intended for use with protein-only structures. For general usage which includes non-protein or non-canonical residues, you may want to...
Looks like you've added an `inputs/` top level directory and left some convenience scripts in the branch. (It also looks like you have two `SID_ERMS_Rescore.cc` -- I don't know if...
To help track down the issue, what's the error message you're seeing? (Or what else is letting you know it's not working.)
The issue with mutation of cysteines in disulfides is that just mutating the one residue leaves the other side of the disulfide being "half a disulfide" rather than being a...
I just downloaded and checked rosetta_bin_ubuntu_3.14_bundle.tar.bz2, and had no issues extracting it with `tar -xvf rosetta_bin_ubuntu_3.14_bundle.tar.bz2`. For my downloaded file: ``` $md5sum rosetta_bin_ubuntu_3.14_bundle.tar.bz2 f7b172ecade5ead6478cab518f245bf3 rosetta_bin_ubuntu_3.14_bundle.tar.bz2 $sha256sum rosetta_bin_ubuntu_3.14_bundle.tar.bz2 a5e09d71c22613c72048ac0a60bafeee58c4a5944fb60435ed21727b3afe79a0 rosetta_bin_ubuntu_3.14_bundle.tar.bz2 ```...
> How does beautification work now with the fork system? I think that if "Maintainers are allowed to edit this pull request." is checked, it should be possible to [manually...
@lyskov That's for beautification of the `main` branch -- I believe Jack is looking for the slightly different use case of beautifying a (as yet not merged) PR branch, where...
@JackMaguire PR #204 is merged now. If you can merge `main` into this branch, the test server should be able to give you the beautification diffs.