roblanf

First let's check if it's the drawing time or the calculation time. If it's the calculation time we might need to see if we can draft in some help to...

We might be getting our wires crossed here. I'm talking about the sliding window and cumulative plots.

Just chiming in for the COVID case here. I think an option to mask a singleton site (rather than mask/remove a column) might be useful. The reason is as our...

Heh, good point. I guess it will be something like logistic growth in that case. In a recent alignment of ~11K sequences, 24.5K of the 29.5K sites (~80%) were constant....

treespace plots are now implemented in https://github.com/danlwarren/RWTY/commit/92f6f04ca795d2d3e366922feef244076403c4c7 what's left to do is something similar for any pair of parameters in a function called `makeanim.pair()`

Hi Martin, Always happy to incorporate more tree distances. At some point Michelle Kendall had contributed all of the tree distances in her package. Maybe @danlwarren knows where that went,...

Oh, that sounds really cool. I've noticed actually that in the treespace visualisations the RF distances is kinda odd. I had just put it down to squashing something high-dimensional into...

Hi All, Thanks for the ping on this. Dan and I haven't managed to find the time to work on RWTY2 since everything went insane. But rest assured we'll get...