roblanf

Hi Mike, That's an excellent idea. I'm about to go on leave for a few weeks, but when I return I'll look into it. Rob

Hi Laura, This is a simple one when you know the answer! Right now you're trying to run MinIONQC from _within_ R. This is not what you should do. Instead,...

Hi Laura, You installed the packages perfectly. After that you need to quit R, and then run MinIONQC from the commandline. So, go back to Run, and then you'll type...

Any chance you could explain how this would affect the insert size distribution, and why you think the insert size distribution looks so odd before doing this? My understanding is...

OK, now I'm totally lost! The fastq's I'm using here come straight from a hiseq, with no pre-processing at all. All I'm doing is this: 1. Map forward and reverse...

This sounds pretty reasonable. My guess so far (I'll need to do some digging to check) is that these things are happening: 1. My reference has more repeats at the...

@vinod1981 nope. I still have absolutely no idea what was happening. Out of interest, what is the genome like for your species? One thing that strikes me is that my...

Getting the same error here. Any thoughts? Can email the tree if you like.

OK, I RTFM and I see it could be an issue that I'm using R 4.0.2, and the manual explicitly says I need R 3.x. Will roll back and report...

OK, confirmed. I rolled back to R3.6.3 using conda, and it all works fine now. The switch to R4.0.2 certainly caused the issue for me (happened without me noticing when...