roblanf
roblanf
This is just a suggestion based on some observations of estimating large (>10K sequences) trees. I note that it takes raxml-ng a long time to estimate the starting parsimony tree...
I have noticed that insert sizes from BWA-MEM seem to start high at the beginning of a chromosome, and drop down towards the end. This isn't really an issue (feel...
At the moment our errors for partitioning mistakes are: https://github.com/Cibiv/IQ-TREE/blob/6776a95f15a2eccda2aa330497291dc246575995/alignment/alignment.cpp#L3004-L3007 My suggestion is that we edit the errors as below, and also print out the offending line so users can...
it's currently missing
Love the software. But it took me noticing a few odd things in my results before I went and read all the docs carefully, and then I found this listed...
A (possibly completely rubbish) idea. When using usher + matOptimize to grow a tree, it strikes me that the information on the number of parsimony placements that UShER generates may...
https://github.com/clauswilke/dataviz/blob/153c1bbe5ed113c44156c355a662f765e5595212/docs/visualizing_uncertainty.md?plain=1#L55 I found this sentence hard to parse on first reading: "A Bayesian credible interval tells you about where the true parameter likely is and a frequentist confidence interval tells...
https://github.com/clauswilke/dataviz/blob/153c1bbe5ed113c44156c355a662f765e5595212/docs/visualizing_uncertainty.md?plain=1#L55 "generaly" -> "general" I assign the copyright of this contribution to Claus O. Wilke P.S. *GREAT* book!
E.g. lines for N50, mean, median.
NO idea what's happening here yet. More details are here though: https://discuss.ropensci.org/t/help-with-magick-package/1901