clustifyr
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rnabioco
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
Hello, thanks for developing this package. I am trying to compare my clusters with the clusters of a previously published scRNA seq dataset. The reference clusters don't have the same...
Hi, Can I use clustifyr to annotate cell types of some new species, such as rat which is lack of reference ?
Hi, Thanks for your great work! Does clustifyr support scanpy (another popular scRNAseq toolkit, python version of seurat) ? And, some scRNA matrix are very large, it's very slow for...
I have subset my Seurat object to select the cells from specific clusters (3 and 14). Then I exported the matrix and metadata as required by `clustifyr`. See the code...
1. on different clustering, like clustree? 2. with different number of variable genes? check stability of calls
Build/check issues with R 4.1 on windows, which Bioconductor does not tolerate. Current version removed Seurat2 support.
In rnabioco/antigen-tracking#6 we found two groups who did a similar experiment and ended up with different naming conventions for the same / similar cell types. It would be nice to...
should be pretty straightforward slot searching is already tentatively supported for Seurat objects
Via feature selection + subclustering/subsampling? interested in trying out http://www.rebeccabarter.com/blog/2020-03-25_machine_learning/ Also as an alternative method to find markers