Spectra

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Evaluation rhdf5client to provide an remote HDF5 backend

20

https://bioconductor.org/packages/release/bioc/html/rhdf5client.html

sgibb

Add to Spectra object when backend is MsBackendCompDb

6

With a `MsBackendDataFrame` backed object you can concatenate like this and thus add to your object: ```r library(Spectra) spd

stanstrup

This issue was briefly mentioned in #124. I think we need a way to serialise `Spectra` objects. This is trivial for in memory backends - the usual `save()` and `load()`...

lgatto

This is based on a comment from @mvinaixa: we should make sure we're not calculating the similarity score only on the peaks that match between the compared spectra, but consider...

jorainer

align/match peaks of two `Spectrum` objects

6

Besides the possibility to use `binning` to match spectra, another possibility to align/match peaks of two `Spectrum` objects could be the following using bipartitte networks: 1. start with a bipartite...

tnaake

When I use `matchSpectra()` to match the map, if the number of matches is too large, it will not be drawn when `plotSpectraMirror()` is drawing. Is there any other way...

v-v1150n

adduct type

1

i am working on storing some MS/MS data in Spectra objects. I was interested in storing the adduct type, so ideally when this is exported to msp or mgf (or...

cbroeckl

Check and fix backends for the new Spectra version

1

If needed, add `extractByIndex()` for `MsBackend` implementations in external packages. These packages would then need to depend on Spectra version 1.15.10. This is **only** required if the backend extends `MsBackendCached`....

jorainer