KMC
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refresh-bio
Fast and frugal disk based k-mer counter
Hi I am willing to install KMC as part of the required dependencies for IVA and I am struggling with the installation of KMC on my Mac. #1. I set...
After comparing two genomes to obtain a large number of unique k-mers, how to quickly find the position of k-mers on the genome? Currently, I use software such as `bwa`...
Hello, Thank you for this wonderful tool. Would it be possible to ask for two small features? We are using coverage histograms to estimate genomic properties. We have found cases...
For canonical k mers, which ATCG combination is dropped? For example, AAA, TTT, the kmc will dump all TTT counting to AAA or vice versa? What's the rule? Thanks!
The code becomes more understandable, the compiler can easier optimize the code. Further on, it will look more natural in the [rust bindings `kmc-rs`](https://github.com/EQt/kmc-rs) to KMC's API.
Hello, I have a dataset where the KMC database is 1.4 Terabytes. I have been using the GetCountersForRead function, but as currently implemented this requires the database be loaded in...
Hi, my kmc can not work on aarch64 Linux: Stage 1: 100% Stage 2: 0%terminate called after throwing an instance of 'std::bad_function_call' what(): bad_function_call What can I do? Please help....
https://github.com/refresh-bio/KMC/blob/a6647089f099b334dabafef116ccb1fa31431674/kmer_counter/s_mapper.h#L15
How to install on aarch64 platform. Centos7.6 gcc-7.3.0
