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GetCountersForRead requires random access mode

Open tbenavi1 opened this issue 3 years ago • 5 comments

Hello,

I have a dataset where the KMC database is 1.4 Terabytes. I have been using the GetCountersForRead function, but as currently implemented this requires the database be loaded in random access mode and loaded into RAM. Do you have any ideas for how to get the kmer counts across the read for such a large dataset that doesn't require loading the entire database into memory? Thanks for any insights.

tbenavi1 avatar Dec 09 '20 14:12 tbenavi1