Reece Hart

Results 228 comments of Reece Hart

I've recently started getting errors like `AssertionError: cant parse version default/1.2.6.dev1` in several repos. (I believe this tag was generated by hg-git (unconfirmed). In any case, I did make the...

Yep, the intent was to eventually break it out. I didn't because 1) The name `ga4gh.core` is outside VR scope, so it felt to me that officially using this name...

I both like and dislike that idea, @larrybabb . As I mentioned, I share the concern about usurping the ga4gh namespace. However, putting organizational structure into package names conflates two...

It's certainly still desirable. No ETA. I'm happy to take a PR for this issue.

That command suppresses warnings made through the warnings module. The messages that you're seeing are warnings made through the logging module. There really no way to suppress those specifically. If...

I don't need eutils in my work at the moment, so I'm not adding new features or fixing bugs. But, I will gladly accept PRs if you have something to...

As discussed in #113, we won't support circular sequences as a schema property. Instead, we will add support for callers to request that a sequence is interpreted as circular.. Possible...

Decided to drop this from the next release because db migration hasn't really been tested yet and there's already a lot going on. Deferring.

@mbutterfield-GENOME: I suspect that the issue is that you're passing a binary key; it must be unicode. From your initial post, look here: ``` interface-1 | File "/usr/local/lib/python3.13/site-packages/biocommons/seqrepo/fastadir/fabgz.py", line 67,...

@mbutterfield-GENOME : Please confirm that this issue is resolved for you. I'll close for now.