marcin p. joachimiak

some CURIEs have a lower case prefix now

1

some CURIEs have a lower case prefix now this includes: metpo pato envo

NCBITaxon:1352348 biolink:OrganismTaxon allosalinactinospora_lopnorensis NCBITaxon:702744 biolink:OrganismTaxon salinactinospora_qingdaonensis NCBITaxon:168697 biolink:OrganismTaxon salinispora_arenicola NCBITaxon:351187 biolink:OrganismTaxon salinispora_pacifica NCBITaxon:168695 biolink:OrganismTaxon salinispora_tropica NCBITaxon:1494606 biolink:OrganismTaxon sporohalobacter_salinus NCBITaxon:104205 biolink:OrganismTaxon streptomonospora_salina

ingesting range_tmp from Madin et al csv

2

In the Madin et al dataset (which can be downloaded from this [location](https://github.com/Knowledge-Graph-Hub/kg-microbe/blob/master/download.yaml#L94-L97) as specified in `download.yaml`), there is a column called `range_tmp` which has values like _mesophilic_, _thermophilic_, _thermotolerant_,...

use METPO properties for the relation NCBITaxon:XXXX -> degrades -> lignin @sujaypatil96

Change BacDive strain node IDs from strain:bacdive_XXXXX to bacdive:X…

2

…XXXX Update strain node identifier format to use BacDive IDs directly: - Strain nodes now use bacdive:XXXXX instead of strain:bacdive_XXXXX - Updated strain label generation to reflect new ID format...

https://mediadb.systemsbiology.net/defined_media/growthdata/

unroll strain features to strain level, possibly with disconnected taxa

1

☒ Strain creat ☒ Feature link ☒ No NCBITaxon ✔ Submit → Review your answers ● Should strain nodes ALWAYS be created for every BacDive record, or only when TYPE_STRAIN...

This is a snippet/section of the JSON for one strain: { "General": { "@ref": 688, "BacDive-ID": 1006, "DSM-Number": 2046, "keywords": [ "genome sequence", "16S sequence", "Bacteria", "facultative anaerobe", "spore-forming", "mesophilic",...