marcin p. joachimiak

369 media [bacdive_media_links__crbip.txt](https://github.com/user-attachments/files/21562039/bacdive_media_links__crbip.txt) eg https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=7

time poetry run kg transform -s ontologies /global/cfs/cdirs/m4689/master/test/kg-microbe/venv/lib/python3.10/site-packages/eutils/__init__.py:4: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from...

KGM repo has 9426 objects!

https://www.biorxiv.org/content/10.1101/2025.07.11.664459v1 Data will be here eventually but this link does not work: https://github.com/realmichaelhoffert/bacterial_periodic_table/tree/main

https://togomedium.org/ has almost 40k strains with ~3k media and ~1.5 components. expecting pre-ontologized data here but we shall see. the API endpoint is below, so for KGM ingest we could...

https://pmc.ncbi.nlm.nih.gov/articles/PMC4201361/

https://bakrep.computational.bio