marcin p. joachimiak

icon company Lawrence Berkeley National Laboratory icon location Staff Researcher and Software Developer at LBNL. Interests: Computational Biology / Systems Biology / Machine Learning / Deep Learning / Knowledge Graphs

Results 190 issues of marcin p. joachimiak

Datasheet update

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clique merge preference

https://github.com/biolink/kgx/blob/f5c8ab93a3b83271e1ce39878df6af3841b9138d/tests/unit/test_clique_merge.py#L110

odd CHEBI label

│ CHEBI:30089 │ a │

add entries in Infores and FAIRsharing

some medadive ingredients live as integer ids

in Makefile rename kg-microbe-core.tar.gz to KGMicrobe.tar.gz

And kg-microbe-biomedical.tar.gz to KGMicrobe-biomedical.tar.gz

isolation_source:abort from bacdive

isolation_source:abort Turns out that is an unfortunate (truncated) bacdive category: “Cat1”: “#Host Body Product”, “Cat2”: “#Urogenital tract”, “Cat3”: “#Abort” This one was sheep/goat but a lot calf as well —...

sort transforms in consistent order

odd merge behavior with 'preserve' keyword and missing some sources in merged output for specific edges

I have these two edges in a single transform: assay:API_20A_ARA biolink:assesses NCBITaxon:818 NCIT:C153110 bacdive:1599 assay:API_20A_ARA biolink:assesses NCBITaxon:818 NCIT:C153110 bacdive:1600 so only difference is the source in the last column. I...

63 neanderthal proteins from UniProt

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