Ryan Corces

That looks like a small bug in the logic of the code there. The solution would be to manually load the package associated with your genome prior to running: ```...

I'm leaving this open to fix the logic in the code. The problem is that in many places, I removed the `requirePackage()` statement that loaded the genome automatically because we...

Thanks for confirming. I'm going to leave this issue open so that we're reminded to fix this bug.

@wuv21 - I converted this to an Issue post. I think the most important question is why do mean1 and mean2 get set to NA in the first place? Any...

I have temporarily patched this on a new branch (`dev_idxFilter`) via https://github.com/GreenleafLab/ArchR/commit/f091e426bbe6f78b149ded4f9b49e86ad4f5640f but I think the better fix is to remove these offending rows from the motif matrix entirely. Will...

Thanks for the reminder. This has been a thorn in my side for a while. There are some problems rendering the PDF. I think I will likely remove the PDF...

Hi @rcorces! Thanks for using ArchR! Please make sure that your post belongs in the Issues section. Only bugs and error reports belong in the Issues section. Usage questions and...

I added permalinks to the places I think you are pointing to. Leaving this issue for @jgranja24 to resolve

Hi @bschilder! Thanks for using ArchR! Please make sure that your post belongs in the Issues section. Only bugs and error reports belong in the Issues section. Usage questions and...

Maybe this is a problem with some update to the bioconductor package `S4Vectors`. You appear to be using a very new version (i.e. newer than the default on bioconductor)? Can...