spladder
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ratschlab
Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
* spladder version: 3.0.2 * Python version: 3.7.10 * Operating System: CentOS Linux release 7.9.2009 ### Description Running `spladder test` on output from spladder build (run according to the "Use...
* spladder version: Latest * Python version: version compatible with latest spladder * Operating System: Ubuntu * new environment was made and spladder installed via conda ### Description This error...
* spladder version: The one previous to latest * Python version: compatible with spladder version * Operating System: Linux ### Description Running spladder in test mode. New version gives index...
* spladder version: * Python version:3.6 * Operating System: Operating System: Red Hat Enterprise Linux Server 7.2 (Maipo) ### Description I tried to run spladder viz command ### What I...
Version nos: SplAdder v2.4.2/python 3.8.5/CentOS 7.9.2009 (using Univa Grid Engine) I've had no issues running SplAdder on a large cohort (68 samples in various conditions), and am now visualising the...
Hi Andre From the sample data of test case events, I took four bam files 1,2,3,4 I ran these commands: /home/nitin.m/SPLAADER/spladder-master/Python-3.6.4/bin/spladder build -o . -a /home/jyoti.k/TESTING/SPLADDER/SPLADDER_RESULTS/EXAMPLE/spladder-master/tests/testcase_events/data/testcase_events_spladder.gtf -b bam.txt --extract-ase --event-types...
* spladder version: *Python version:3.6.4 *Operating System: Red Hat Enterprise Linux Server 7.2 (Maipo) CPE OS Name: cpe:/o:redhat:enterprise_linux:7.2:GA:server ### Description I tried to run viz command for gene1 with all...
There is no parameter to specify the height and width of the plot created.
Hello! I'm working on large cohort with thousands of samples ( > 100 TB). However, due to the limitation of storage, it is not possible to keep all aligned reads...
* spladder version: 3.0.5 * Python version: 3.9 * Operating System: ubuntu ### Description According to these docs: https://spladder.readthedocs.io/en/latest/file_formats.html#output-files-build-mode Intron retention output file should contain `e2_cov_region: fraction of positions in...
