Andrew Rambaut

Results 90 comments of Andrew Rambaut

BEAUti won't allow me to save .xml file due to priors

Unable to reproduce this. Closing until more information

Exporting tree as newick gives no response.

Does it export before you reroot it? If you can post the original tree and a sequence of steps that replicates the issue, that would be useful for debugging.

Add ability to create columns in Tracer that are expressions of other columns

This issue was moved to beast-dev/tracer#16

HMC for ArbitraryBranchRates

Seems to have been done

Unify reading and writing of trees for utility programs

I have raised this on to milestone v1.10, primarily for the maintenance of node vs branch attributes.

Problem updating (Gamma)SiteRateModels when using MultiPartitionDataLikelihoodDelegate and TreeDataLikelihood

@GuyBaele - Following this up. Does this issue need to be updated?

Need to refactory dr.evomodel.arg.ARGModel, which has 4471 lines

ARG needs love an attention...

unexpected highlighting next to root node

Is this with the released v1.4.4 version? I have just uploaded a new test pre-release: https://github.com/rambaut/figtree/releases/tag/v1.4.5pre If you confirm the issue is still there, could you provide some details about...

i want display node and Branch Labels

Sorry - it is unclear what you are trying to do here. The second image seems to suggest the bootstrap values are being imported and displayed?

Add mean lines to violin plots

This turns out to be a bit complicated to implement, push to later