Andrew Rambaut comments

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                                            Andrew Rambaut

Allow user to add set of TMRCAs for ancestral state reconstruction

This is related to #860. Would it create an additional log file for each TMRCA state reconstruction - yes if were sequences.

Add covariates for skygrid in BEAUti

Someone got an example XML?

Import dates option in Tempest?

There should be an 'Import Dates' option in the File menu:

Import dates option in Tempest?

I agree. Yours doesn't have that option. I will investigate.

Check for 0s or (0/1s) in BEAUti GLM import

Added checks for zero values/logging and binary/standardization in the generator check. Will add UI constraints later.

weird behaviour of the gmrfBlockUpdateOperator

Whether this is a different manifestation of #899 needs to be investigated. It may be numerical problems computing the HR.

Newick files with comma-delimited labels load incorrectly

Comments (in `[`, `]`) and 'metacomments' are only defined by the Nexus format. Surround the tree by: ``` #NEXUS begin trees; tree TREE = (('A','B')[&label=1,!color=#73ffff],'C'); end;

Newick files with comma-delimited labels load incorrectly

I agree - it should either complain or parse them.

Can I setup colour range in this way in figtree

No, sorry. You could scale the attributes so 1 to 10 gets mapped to 1 to 2 (so the value 1 is the mid-point). You would then edit the scale...

can not export PNG/PDF

This occurs when the tree has not yet been saved to a file (after, say, copy and pasting in).