Qin Yu

Found the code not working when I was doing LMC yesterday. `lifted_costs` is now created as a 1D `float64` array, `lifted_costs = np.zeros(len(lifted_labels), dtype="float64")`, in `elf`'s `lifted_problem_from_segmentation()`. Should fix #109...

Run plant-seg GUI and set either "Save Raw Data" on causes error

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Default configs with patch 80x150x150 and 3D GASP Error ``` 2022-02-01 17:08:40,882 [ThreadPoolExecutor-0_0] INFO PlantSeg - Executing pipeline step: 'segmentation_postprocessing'. Parameters: '{'factor': [1.0, 1.0, 1.0], 'order': 0, 'save_raw': True, 'state':...

Bootstrap labels duplicate after previewing in edittable mode

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### Description Bootstrap labels duplicate after previewing in edittable mode ### Steps to reproduce 1. edit a table using [EditTable](https://www.dokuwiki.org/plugin:edittable) plugin 2. add a `123` in a cell 3. it...

Ilastik on EMBL Jupyter Hub Image Analysis Desktop cannot be launched

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## To Reproduce Steps to reproduce the behavior: 1. Launch the Image Analysis Desktop from EMBL Jupyter Hub 2. `$ ilastik` ## Error message/traceback 

Press a key crashes ilastik - ERROR: Could not open libxcb-keysyms

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## Describe the bug Press a key on keyboard while ilastik is active crashes it. ## To Reproduce Steps to reproduce the behavior: Within the ... workflow 1. Open VNC...

### Design Changes - Model zoo yaml record was checked unnecessarily each time `get_model_zoo()` or `list_models()` is called, now this zoo information is stored in a `ModelZoo` singleton - Model...

Allow direct search and download from BioImage Model Zoo

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Hey @oeway are you coming to EMBL on 11 March? I'll pass by and consult you the best way of allowing users to use models from Zoo in PlantSeg.

Napari GUI: Parameter/config checking happens at widget runtime

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Input should be checked and stopped at Napari interface before widget buttons get clicked.

Open PlantSeg Napari GUI, then select a model from this widget.

I am currently making a zoo object to keep track of models, so that functions don't `call list_models()` to load from yaml files and record updates are kept in one...