Qin Yu


`statics_kwargs` vs `runtime_kwargs`

2

What is the significance to have both keyword args in functions such as `start_prediction_process()` @lorenzocerrone

Transfer PlantSeg from HCI to Kreshuk Lab

4

To transfer PlantSeg from [Heidelberg Collaboratory for Image Processing](https://github.com/hci-unihd) to [Kreshuk Lab](https://github.com/kreshuklab): - [ ] @lorenzocerrone may follow this guide to transfer: [Transferring a repository owned by your organization](https://docs.github.com/en/repositories/creating-and-managing-repositories/transferring-a-repository#transferring-a-repository-owned-by-your-organization) -...

- by foreground filter #174 - by min_size - anything else?

Napari UI: Renamed layers no updated in dropdown lists

2

E.g. After GASP, the "Run Segmentation Fix from Nuclei" widget doesn't find the immediate GASP output in the drop down list. But if I GASP again, the previous renamed GASP...

Napari UI: Coordinate doesn't reflect real position

1

E.g. 260 in Z shows 74. This image has x=y>1000 

No orthoviewer

1

Related posts: [Napari visualization in 3 planes](https://forum.image.sc/t/napari-visualization-in-3-planes/57768)

When I used the nuclear segmentation as seeds, there are errors from the lower-level libraries. Erosion of nuclei enables the algorithm to run. So maybe we should consider an erosion...

Unnecessary check of preprocessing/prediction section configs when only using segmentation function

1

Now I try to run LMC but plantseg 1.6.0 checks my outdated cnn_pred part of config. Also, it reports error for model mismatch when I only want to use LMC.

[FEATURE] Package Cellpose models for BioImage.IO model zoo

2

**Is your feature request related to a problem? Please describe.** Hi @carsen-stringer! I propose adding an `export_bioimageio()` function/method in Cellpose to facilitate packaging Cellpose models for the BioImage.IO model zoo....