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qiita-spots
Qiita - A multi-omics databasing effort
https://github.com/qiita-spots/qiita/blob/57d1b146729223da9daa286a1cc75db6f2923746/qiita_db/processing_job.py#L902-L906
Is there a mechanism to insert the latest default workflows into a fresh new qiita DB? Do you provide these information as some file or do they just live in...
I think the local filenames of the GG 13.8 reference, used in the qp-target-sequencing plugin, is out of sync between qiita environment manager here: https://github.com/qiita-spots/qiita/blob/57d1b146729223da9daa286a1cc75db6f2923746/qiita_db/environment_manager.py#L100-L108 and in the plugin itself:...
I am playing with the database to get to a productive state, i.e. without test data but with necessary base data included. I therefore removed all entries from the `filepath_type`....
When setting `TEST_ENVIRONMENT = FALSE` the command `qiita-env make --no-load-ontologies --download-reference` fails with errors ``` (qiita) qiita@vbox-stefan:~$ qiita-env make --no-load-ontologies --download-reference Creating database Inserting database metadata Building SQL layout Applying...
I am struggling with coming up with the correct syntax to encode a "publication" in the configuration file for a plugin. I unfortunately couldn't find an example in the plugin...
I am using the github action to show how I would set up a **productive** qiita instance (focusing here only on the database) and further show that this database still...
The Qiita DB Schema file qiita_db/support_files/qiita-db.html is extremely helpful to understand the design of the database. I just found that there are additional tables (outside the qiita.* schema) that are...
I came across the situation that I configured and started plugins on top of the qiita_test system. Adding a new study, with new 16S prep and uploaded per_sample_fastq files led...