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Qiita - A multi-omics databasing effort

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Currently they're hardcoded. A better solution might be to make use of python configuration files so this is completely parametrized and dynamic at run time. If we change our requirements...

enhancement
refactor
component: ebi

_This is probably not alpha 0.1 release._ There should be a mode for paired sample analyses (for example Procrustes, correlation between OTUs and Metabolites, etc) which restricts the samples in...

method addition

Currently it is only possible to process FASTA studies that include quality files, otherwise you will get a pop-up saying that you need QUAL files.

nice-to-have

I'm not really sure what's supposed to go in this field. Should this be something like "Study contact" or "Data depositor"?

enhancement
GUI
easy-fix
CMI-request
nice-to-have

From @rob-knight, should likely also happen when the a lab manager is added too

enhancement

Any reason to not use xsrf_form_html? I believe we're not using Tornado's native XSRF protection at this time. Need to add `"xsrf_cookies": True,` into settings. More details [here](http://tornado.readthedocs.org/en/latest/guide/security.html)

enhancement

Not urgent right now, but would be good to have it.

enhancement
documentation

Currently, there are some columns replicated between qiita_user and study_person (name, affiliation, phone, address). It would be better to remove those columns from qiita_user, but then when a new user...

enhancement
database changes

Not a lot of discussion has gone into this, but we do need to figure out how to approach this.

enhancement
documentation
group input
database changes
nice-to-have
IsThisStillAnIssue?

The way optional parameters are represented are by providing a default value. This is not always the case and the POSIX command argument structure does represent this correctly. The way...

priority: high