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precimed
Causal Mixture Model for GWAS summary statistics
Hi there, I've been using MiXeR to compare and analyze five different GWAS files. For the most part, MiXeR has been running properly, but MiXeR either produces no figures or...
Hi, When I try to generate figures using mixer_figures.py two, after a seemingly successful 'fit2' and 'test2' after already calculated univariate results, the message: --json argument does not contain brute1...
Hi, I just have a suggestion for the --combine argument. It seems that it will create a combined fit and test.json file even if all 20 replications are not complete....
some problems for generating 1000G.EUR.QC.prune_maf0p05_rand2M_r2p8.repNN.snps in DATA PREPARATION
Hi, I've tried to use mixer in Linux(CentOS 7.9), Q1：--bim-file LDSR/1000G_EUR_Phase3_plink/[email protected] \ --ld-file LDSR/1000G_EUR_Phase3_plink/[email protected] \ i don't know the meaning of "@" in the code provided by Tutorials？ Q2： I...
Hi, I've tried to use mixer in Linux(CentOS 7.8), and I have a problem with `${SLURM_ARRAY_TASK_ID}` in preparing reference panel and running mixer. Our Linux system doesn't have SLURM, but...
Hi, May I ask what is the approximate running time for univariate and bivariate analysis? Thank you.
Finished running all the prerequisites cd ~ && wget https://dl.bintray.com/boostorg/release/1.69.0/source/boost_1_69_0.tar.gz tar -xzvf boost_1_69_0.tar.gz && cd boost_1_69_0 ./bootstrap.sh --with-libraries=program_options,filesystem,system,date_time ./b2 --clean && ./b2 --j12 -a cd ~ && git clone --recursive...
Hi Alex, There are some new output items in v1.3, including rho_zero, rho_beta, shared_fraction. Would you mind adding a one-sentence description of each in the README file? Thanks, Weiqiu
Dear Dr. Frei, I successfully run codes until fit1, so currently I am running fit1 on a server and it is running without any error but its not terminating. I...
hi Oleksander, I was wondering if it is possible to select a custom name for my data in my plots- univariate? E.g attached it gives the whole path to the...