pirovc
pirovc
Thanks. I actually meant what is the ganon command generated by the taxprofiler.
Can you also send the command used for the specific run `2612_pe`?
Thanks for the commands. > Yes the data are the same. Tried to upload them but the file is too big. Can be found [here](url). > > [ganon_GHA.zip](https://github.com/pirovc/ganon/files/14310755/ganon_GHA.zip) Results by...
I mean to double check that all the inputs are correct, for example, the files are not corrupted or somehow duplicated. If not, I would need some more information to...
Thanks, the logs are looking alright. Can I also have the `.rep` files generated from those runs? (`2612_pe_ERR5766176_db1.ganon.rep` and `2612_se_ERR5766180_db1.ganon.rep`)
Thanks again. I could not detect any issue in those files and reports generated with them will add up to 100%. Note that they are different from the ones you...
No worries, just keeping the house clean, feel free to re-open anytime.
Hi, thanks for reporting. I will take a look in this issue to see if there's a bug. Did you try to use the `-m` parameter to check for file...
Indeed, if the MD5 file is not available, genome_updater is keeping the file. For now, you can change the following line to `return 1` and genome_updater should skip those files....
Thank you very much for the detailed answer. I will try out the approaches suggested and come back here if something goes wrong. Feel free to close the issue. Cheers.