pirovc

You are right about the k-mer/minimizer. The minimizer is the name of the chosen k-mer (`k=19` by default) in a window ( `w=31` by default). The minimizer is not randomly...

Sure I will do some tests and post here once I have some time. Since you already notice an increase I guess I will keep on the older version for...

Sounds like a nice solution if not too problematic or ugly to implement. In reality I do not actively use binpacking anymore, so this is not a problem for me...

Look good to me! Thanks. Later on statistics by taxonomic level can be included, but first I'd have to output them on the classify or report logs.

> @pirovc I realise this _may_ be out of date now since ganon 2.0 came out - to your knowledge would any changes be required (or any additional info?) @jfy133...

Unfortunately that is the case and some records are removed from NCBI forever. Thanks for the investigation, I will add this information to the README and link this issue.

Thanks for the investigation. Did you ever manage to find sequences for any of those "suppressed" entries? The metadata still exists in the ftp and NCBI website but you never...

Hi Jongin, Apparently jobs 4 (get_taxdump) and 47 (get_accession2taxid) could not be finished. Both of them are just downloading data from NCBI servers. Do you have some internet restrictions? you...

Dear Jongin, Can you please send me the contetnts of the file: `/mss2/projects/META2/taxonomy_classification/metameta/db/custom_db/log/dudes_db_custom_profile.log` Vitor

Hi Jongin, Can you check what is the python version in your environment? I guess the error can be related to this: https://github.com/pirovc/dudes/issues/2 if you have python > 3.5 In...